Shopify accountants
Specialist accounting and support built for Shopify store owners
We support UK-based Shopify sellers with clear, proactive accounting for fast-moving online businesses. From sales reconciliation and Shopify payouts to VAT compliance and year-end accounts, our chartered accountants help you stay compliant, profitable, and in control as your store grows.
You’ll work with a dedicated accountant who understands Shopify integrations with Xero, QuickBooks, and tools like A2X—ensuring accurate numbers, meaningful reporting, and properly managed tax obligations.
VAT registration & quarterly submissions.
UK & EU VAT compliance for online sellers
Handle filing to HMRC
Fixed monthly fees with proactive support
Shopify Accountants
We are UK-based specialist Shopify accountants supporting eCommerce businesses with accurate, compliant, and scalable accounting systems. Shopify stores move quickly — daily sales, refunds, fees, payouts, and multiple payment gateways all create complexity that generic bookkeeping cannot handle properly.
Our role is to bring structure and clarity to your Shopify finances. We manage the full accounting process using cloud-based systems such as Xero or QuickBooks, supported by specialist eCommerce integrations, so your numbers always reflect what is really happening in your business.
You will work with a dedicated accountant who understands Shopify sales flows, payment processing, and payouts — helping you interpret your figures, stay compliant with HMRC, and make informed decisions as your store grows.
Do you use A2X software?
Accurate Shopify accounting depends on correctly reconciling sales, refunds, fees, taxes, and payouts — not just importing transactions. A2X is a specialist settlement reconciliation tool that helps convert Shopify sales data into clean, usable accounting entries for Xero or QuickBooks.
When configured correctly, A2X allows Shopify sales and payouts to be summarised accurately, reducing errors and ensuring your accounts reflect true revenue and costs. This is especially important for stores processing high order volumes, multiple payment gateways, or international sales.
We use A2X as part of a wider accounting framework — not as a replacement for proper oversight. Your accountant reviews, validates, and explains the numbers, ensuring your records remain compliant, meaningful, and ready for VAT returns, management reporting, and year-end accounts.
Get your business off
to the best start.
We have helped thousands of UK businesses with their accounting needs. We seem to be doing a good job
as our clients are always happy to tell us.
Speak to a Shopify accounting specialist
Want clear advice on VAT, payouts, and managing your Shopify finances properly? Speak directly with a specialist accountant who understands eCommerce businesses and UK compliance.
The accountancy advice we offer
We support Shopify sellers with practical, specialist accounting advice that goes beyond basic bookkeeping. Whether you’re launching a new store, managing VAT, or scaling into new markets, our team helps you stay compliant, profitable, and in control of your finances.
Our Shopify accounting support includes:
- VAT registration and ongoing compliance in the UK and across Europe
- Accurate bookkeeping with clear visibility over Shopify sales and payouts
- Monitoring your figures so you stay compliant with all HMRC deadlines
- Fully managed Shopify accounting for UK limited companies
- Guidance on expanding into new countries and understanding local tax obligations
We combine cloud-based accounting with hands-on advice, so you always understand where your business stands financially. Our pricing is transparent and fixed — what you see is what you pay, with no unexpected costs.
Case study – ecommerce & landlord sector specialists
Sophie is thriving with simplified finances
Sophie owned rental properties and also ran an online shop, but managing taxes for both worlds left her constantly stressed. “I never knew if I was getting it right,” she admitted. Fusion provided specialist support, simplifying her property records, ensuring she claimed the correct landlord reliefs, and fixing her ecommerce VAT setup. Suddenly, deadlines were no longer missed and reporting became crystal clear. With Fusion’s practical guidance, Sophie saved money on her annual bill and had reliable data to share with lenders. She says our help turned “complex rules into simple steps,” freeing her to grow her property portfolio and ecommerce sales without fear of HMRC surprises.
Fusion Accountants made complex rules simple — now I can focus on expanding my business.
Sophie Williams
–
Landlord & Ecommerce Entrepreneur
Partnership with SimplyVAT.com
From registering your business for VAT to looking after your monthly filings and communicating with tax authorities – our exciting partnership with SimplyVAT.com will take the stress out of VAT compliance. With their personal service, tax technical knowledge and practical industry experience you can trust them to support you through your global expansion plans.
Fusion clients will receive £50 off their registration fee & 50% off their first month of VAT compliance when you use SimplyVAT.com.
Why online sellers choose us:
Tax-technical expertise and ecommerce specialists
SimplyVAT.com experienced team of VAT experts have the knowledge to help with any VAT problem.
Transparency and ethical practices
SimplyVAT.com core values are Honesty and Collaboration and always operate with transparency. You are in control and you will always know what is happening with your VAT accounts.
Removing the burden of VAT
As an entrepreneur, you have 1000’s of other things to look after. You can go for global domination knowing that your VAT obligations are in safe hands with Fusion Accountants and our partner SimplyVAT.com
The personal touch
We know how important it is to trust a person who is supporting your business – that’s why your SimplyVAT.com dedicated Client Manager will be at the other end of the phone when you need them.
Take the next step to stress-free VAT compliance today!
Our accounting software partners
We use cutting-edge online accounting software that connects to Shopify to record sales, sync orders, VAT, and settlements and generate useful financial reports that simplify your day-to-day bookkeeping. Also, we can connect and merge multiple stores.
Using Xero and Quickbooks, you can easily track your eCommerce business’s performance, worry less about everyday accounting and HMRC deadlines, and focus on growing your business.
If you are a first-time accounting software user, we can recommend the best platform for your Shopify store.
We have trusted partnerships with: SimpyVAT.com, Veeqo, Xero (Platinum Partners), Quickbooks (Platinum ProAdviser), Freeagent (Accredited Partner), Dext, GoCardless and many more.
What our customers say
Why choose us
Dedicated accountant
Exceptional client service is at the core of everything we do. Your client manager will get to know your company and help with all accounting needs.
Qualified & accredited accountants
Our client managers are certified by Xero, Quickbooks, and FreeAgent. So you are in very capable hands.
ICAEW & ATT registered
As registered and regulated by the Institute of Chartered Accountants in England & Wales (ICAEW) and the Association of Taxation Technicians (ATT), our qualified and committed staff offer professional business guidance.
Transparency
We will never surprise you with a bill. Our affordable monthly fees are all-inclusive and include no hidden fees.
Forward thinking
To help our clients save time and money, we offer the latest cutting edge technology and apps.
Value add service
We are always looking for ways to improve our accounting service. Ask us about our cash flow forecasting software, legal services, and contractor insurance add on services.
Fusion services
We provide a comprehensive range of accounting and tax services to help launch your new venture.
Meet our ecommerce accountant
Jawaad Hussain
Client Accountant
I joined the Fusion team in 2015, and as an ACCA qualified Client Accountant, I work closely with SME’s providing tax, accounts, and business advice.
I am also certified with Xero, QuickBooks & FreeAgent. I particularly enjoy using technology and smart apps to support the business’s needs and growth.
I like playing football (BIG Liverpool fan – YNWA!), cycling and trekking. I also enjoy travelling and visiting new places. My favourites destination so far would have to be Istanbul.
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FAQ ‘s
Do Shopify sellers need to register for VAT in the UK?
Shopify sellers must register for VAT if their taxable turnover exceeds the UK VAT threshold, or earlier if they sell internationally, use fulfilment centres, or trade in EU countries. We assess your setup and handle VAT registration and ongoing compliance correctly from the start.
How are Shopify payouts accounted for?
Shopify payouts often include fees, refunds, chargebacks, and taxes, which can make reconciliation complex. We accurately reconcile your Shopify sales and payouts so your accounts reflect true revenue and profitability.
Can you integrate Shopify with Xero or QuickBooks?
Yes. We integrate Shopify with Xero or QuickBooks using trusted tools such as A2X and other approved add-ons. This ensures your sales, fees, VAT, and settlements are recorded accurately and efficiently.
Do you support Shopify sellers using A2X?
Yes. We regularly work with Shopify sellers using A2X to automate sales and payout reconciliation. We ensure A2X is configured correctly and that the data feeds into your accounting software in a way that supports VAT and HMRC compliance.
Can you help Shopify sellers selling internationally or in the EU?
Yes. We support Shopify sellers trading across multiple countries, including advice on VAT, EU OSS schemes where applicable, and managing cross-border sales correctly within your accounts.
Do you work with both sole traders and limited companies?
We support Shopify sellers operating as sole traders, partnerships, and limited companies. Our advice and accounting structure are tailored to your business model and growth plans.
What accounting services do you provide for Shopify sellers?
Our services include bookkeeping, VAT returns, management reporting, year-end accounts, corporation tax, Directors’ Self Assessment, and ongoing advisory support — all tailored specifically to Shopify businesses.
Will I have a dedicated accountant?
Yes. You’ll work with a dedicated accountant who understands Shopify and eCommerce accounting, giving you a consistent point of contact and proactive support throughout the year.
How much does Shopify accounting cost?
Our pricing is fixed, transparent, and agreed upfront based on your business needs. There are no hidden fees, and you’ll always know what’s included in your monthly package.